PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10010020m
Common NameCARUB_v10010013mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family WRKY
Protein Properties Length: 269aa    MW: 30077.4 Da    PI: 4.7918
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10010020mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.81.6e-3174132259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers++dp+++ itY++eHnh+
  Carubv10010020m  74 SDSWAWRKYGQKPIKGSPYPRGYYRCSSTkGCPARKQVERSRDDPTMILITYTSEHNHP 132
                      69*************************998****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-3265134IPR003657WRKY domain
PROSITE profilePS5081132.29468134IPR003657WRKY domain
SuperFamilySSF1182901.83E-2769134IPR003657WRKY domain
SMARTSM007745.6E-3873133IPR003657WRKY domain
PfamPF031061.2E-2675132IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MKRCLDQMAR GYNDHESSQE TGPESPNSST FSDMKALISS HSPKRRRSVD KRVVNVPMKE  60
MEGSRHKGDT TPPSDSWAWR KYGQKPIKGS PYPRGYYRCS STKGCPARKQ VERSRDDPTM  120
ILITYTSEHN HPWPAASSSR NGPKPKPEAK PEPEPEVEPE VEVDVEVEEE DDKFMVLGRE  180
IETTPSCVDE FAWFTEMETT SSTILESPIF SSSSEKKTAV TAASDDVAVF FPMGEEDESL  240
FADLGELPEC SVVFRHRSSV VGSQVEIF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-18751351978Probable WRKY transcription factor 4
2ayd_A2e-18741341574WRKY transcription factor 1
2lex_A2e-18751351978Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00167DAPTransfer from AT1G29280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006304098.10.0hypothetical protein CARUB_v10010013mg
SwissprotQ9LP561e-156WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBLR0GMM90.0R0GMM9_9BRAS; Uncharacterized protein
STRINGAT1G29280.11e-153(Arabidopsis thaliana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.11e-146WRKY DNA-binding protein 65